SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 5)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11695562	0.88[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12622618	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4674298	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6436053	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6745172	0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000225062	Proximal transcriptional regulation
ENSG00000202077	Distal transcriptional regulation
TMBIM1	Distal transcriptional regulation
CTDSP1	Distal transcriptional regulation
PNKD	Distal transcriptional regulation
MIR26B	Distal transcriptional regulation
SLC11A1	Distal transcriptional regulation
AAMP	Distal transcriptional regulation
C2orf62	Distal transcriptional regulation
ENSG00000237281	Distal transcriptional regulation
USP45	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 9)