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rVarBase
SNP Report
Basic Infomation
Name
rs11695562  
dbSNP
Location
chr:2,219234705
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11677067
0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6745172
0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7608923
0.88[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000225062
Proximal transcriptional regulation
SLC11A1
Distal transcriptional regulation
CTDSP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
eQTL related gene
Source
MR-1
Pritchard
SLC11A1
Pritchard
XRCC5
SCAN
ARPC2
SCAN
TTLL4
SCAN
PECR
SCAN
ZNF142
SCAN
C2orf24
SCAN
PNKD
SCAN