SNP Report
Basic Infomation
| Name | rs6546142 dbSNP |
|---|---|
| Location | chr:2,65527443 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10194628 | 1.00[ASN][1000 genomes] |
| rs11126032 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11548392 | 0.87[AFR][1000 genomes] |
| rs11887168 | 1.00[ASN][1000 genomes] |
| rs11887325 | 1.00[ASN][1000 genomes] |
| rs12713530 | 1.00[ASN][1000 genomes] |
| rs12997435 | 1.00[ASN][1000 genomes] |
| rs13001292 | 1.00[ASN][1000 genomes] |
| rs13012226 | 1.00[ASN][1000 genomes] |
| rs13812 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs14294 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17755105 | 0.87[AFR][1000 genomes] |
| rs268854 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268856 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268865 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268872 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs268874 | 1.00[ASN][1000 genomes] |
| rs34004866 | 1.00[ASN][1000 genomes] |
| rs34269329 | 1.00[ASN][1000 genomes] |
| rs34369145 | 1.00[ASN][1000 genomes] |
| rs34657195 | 1.00[ASN][1000 genomes] |
| rs34667950 | 1.00[ASN][1000 genomes] |
| rs34767439 | 1.00[ASN][1000 genomes] |
| rs34840820 | 1.00[ASN][1000 genomes] |
| rs34849808 | 1.00[ASN][1000 genomes] |
| rs34961685 | 1.00[ASN][1000 genomes] |
| rs35291688 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35295972 | 1.00[ASN][1000 genomes] |
| rs35481759 | 1.00[ASN][1000 genomes] |
| rs35503765 | 1.00[ASN][1000 genomes] |
| rs35525037 | 1.00[ASN][1000 genomes] |
| rs35578846 | 1.00[ASN][1000 genomes] |
| rs35925158 | 1.00[ASN][1000 genomes] |
| rs55849982 | 1.00[ASN][1000 genomes] |
| rs6752302 | 1.00[ASN][1000 genomes] |
| rs71424158 | 1.00[ASN][1000 genomes] |
| rs71424159 | 1.00[ASN][1000 genomes] |
| rs71424160 | 1.00[ASN][1000 genomes] |
| rs71424163 | 1.00[ASN][1000 genomes] |
| rs7564461 | 1.00[ASN][1000 genomes] |
| rs8771 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000244534 | Distal transcriptional regulation |
| ACTR2 | Distal transcriptional regulation |
| SPRED2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014