SNP Report
Basic Infomation
| Name | rs6454800 dbSNP |
|---|---|
| Location | chr:6,90799007 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16882480 | 1.00[CEU][hapmap] |
| rs2474613 | 1.00[GIH][hapmap] |
| rs3734661 | 1.00[CEU][hapmap] |
| rs4053599 | 1.00[CEU][hapmap] |
| rs4707582 | 1.00[CEU][hapmap] |
| rs6454799 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6901683 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6919937 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs6931671 | 1.00[CEU][hapmap] |
| rs6940143 | 1.00[CEU][hapmap] |
| rs7452686 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7739280 | 1.00[CEU][hapmap] |
| rs7744774 | 1.00[CEU][hapmap] |
| rs7765125 | 1.00[CEU][hapmap] |
| rs9362703 | 1.00[CEU][hapmap] |
| rs9444735 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9444739 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9444743 | 1.00[EUR][1000 genomes] |
| rs9451325 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9451326 | 1.00[EUR][1000 genomes] |
| rs9451327 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9451328 | 1.00[EUR][1000 genomes] |
| rs9451329 | 1.00[EUR][1000 genomes] |
| rs9451331 | 1.00[EUR][1000 genomes] |
| rs9451336 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9451337 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9451340 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs9451350 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9451352 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes] |
| rs9451360 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014