SNP Report
Basic Infomation
| Name | rs2474613 dbSNP |
|---|---|
| Location | chr:6,90841732 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11968498 | 1.00[JPT][hapmap] |
| rs11969733 | 1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs16882480 | 1.00[MEX][hapmap] |
| rs16882507 | 1.00[MEX][hapmap] |
| rs16882532 | 1.00[MEX][hapmap] |
| rs1884573 | 1.00[ASN][1000 genomes] |
| rs2501722 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2501723 | 1.00[EUR][1000 genomes] |
| rs56259175 | 1.00[ASN][1000 genomes] |
| rs57092243 | 1.00[ASN][1000 genomes] |
| rs58282815 | 1.00[ASN][1000 genomes] |
| rs59064987 | 1.00[ASN][1000 genomes] |
| rs59774151 | 1.00[ASN][1000 genomes] |
| rs632043 | 1.00[JPT][hapmap] |
| rs6454800 | 1.00[GIH][hapmap] |
| rs6454804 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6926678 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6935531 | 1.00[JPT][hapmap] |
| rs73752896 | 1.00[ASN][1000 genomes] |
| rs73752898 | 1.00[ASN][1000 genomes] |
| rs73752899 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| THSD3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014