SNP Report
Basic Infomation
| Name | rs16882480 dbSNP |
|---|---|
| Location | chr:6,90869984 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1158329 | 1.00[AMR][1000 genomes] |
| rs11969733 | 1.00[MEX][hapmap] |
| rs16882326 | 1.00[EUR][1000 genomes] |
| rs16882507 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs16882532 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs2474613 | 1.00[MEX][hapmap] |
| rs4053599 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57603720 | 1.00[EUR][1000 genomes] |
| rs6454799 | 1.00[CEU][hapmap] |
| rs6454800 | 1.00[CEU][hapmap] |
| rs6901683 | 1.00[CEU][hapmap] |
| rs6919937 | 1.00[CEU][hapmap] |
| rs6931671 | 1.00[CEU][hapmap] |
| rs6940143 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7452686 | 1.00[CEU][hapmap] |
| rs9444735 | 1.00[CEU][hapmap] |
| rs9444739 | 1.00[CEU][hapmap] |
| rs9444745 | 1.00[EUR][1000 genomes] |
| rs9451325 | 1.00[CEU][hapmap] |
| rs9451327 | 1.00[CEU][hapmap] |
| rs9451336 | 1.00[CEU][hapmap] |
| rs9451337 | 1.00[CEU][hapmap] |
| rs9451340 | 1.00[CEU][hapmap] |
| rs9451350 | 1.00[CEU][hapmap] |
| rs9451352 | 1.00[CEU][hapmap] |
| rs9451360 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014