SNP Report

Basic Infomation

Name	rs62399294 dbSNP
Location	chr:6,20743992
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 114)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10484631	0.95[EUR][1000 genomes]
rs10946409	0.88[EUR][1000 genomes]
rs1498425	0.83[EUR][1000 genomes]
rs1498427	0.83[EUR][1000 genomes]
rs16884185	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17839864	0.88[EUR][1000 genomes]
rs2328550	0.83[EUR][1000 genomes]
rs2328551	0.83[EUR][1000 genomes]
rs2473648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2473649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2745927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2745928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2819988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2819989	0.98[EUR][1000 genomes]
rs2819991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2819992	0.98[EUR][1000 genomes]
rs2819995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2819999	0.98[EUR][1000 genomes]
rs2820002	0.85[EUR][1000 genomes]
rs2876583	0.83[EUR][1000 genomes]
rs41272361	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4236004	0.88[EUR][1000 genomes]
rs4272215	0.88[EUR][1000 genomes]
rs4299818	0.88[EUR][1000 genomes]
rs4330531	0.88[EUR][1000 genomes]
rs4334975	0.88[EUR][1000 genomes]
rs4383807	0.88[EUR][1000 genomes]
rs4413596	0.83[EUR][1000 genomes]
rs4437452	0.98[EUR][1000 genomes]
rs4524599	0.86[EUR][1000 genomes]
rs4568440	0.88[EUR][1000 genomes]
rs4607421	0.88[EUR][1000 genomes]
rs4618519	0.88[EUR][1000 genomes]
rs4710947	0.93[EUR][1000 genomes]
rs4710949	0.90[EUR][1000 genomes]
rs4710951	0.88[EUR][1000 genomes]
rs4710952	0.88[EUR][1000 genomes]
rs4710953	0.88[EUR][1000 genomes]
rs4710955	0.88[EUR][1000 genomes]
rs4712541	0.93[EUR][1000 genomes]
rs4712543	0.93[EUR][1000 genomes]
rs4712550	0.88[EUR][1000 genomes]
rs4712566	0.83[EUR][1000 genomes]
rs4712567	0.83[EUR][1000 genomes]
rs56935114	1.00[EUR][1000 genomes]
rs57498505	1.00[EUR][1000 genomes]
rs58332063	0.98[EUR][1000 genomes]
rs58839693	0.93[EUR][1000 genomes]
rs61484729	0.95[EUR][1000 genomes]
rs62397654	0.93[EUR][1000 genomes]
rs62397656	0.85[EUR][1000 genomes]
rs62397657	0.95[EUR][1000 genomes]
rs62397658	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62399260	0.88[EUR][1000 genomes]
rs62399261	0.98[EUR][1000 genomes]
rs62399283	0.98[EUR][1000 genomes]
rs62399284	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399286	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399287	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399288	0.98[EUR][1000 genomes]
rs62399291	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399296	0.98[EUR][1000 genomes]
rs62399297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399298	0.98[EUR][1000 genomes]
rs62399299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399300	0.98[EUR][1000 genomes]
rs62399301	0.83[EUR][1000 genomes]
rs62399302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456372	0.93[EUR][1000 genomes]
rs6456373	0.93[EUR][1000 genomes]
rs6456375	0.88[EUR][1000 genomes]
rs6456378	0.88[EUR][1000 genomes]
rs6900375	0.93[EUR][1000 genomes]
rs6909682	0.83[EUR][1000 genomes]
rs6910032	0.83[EUR][1000 genomes]
rs6929760	0.93[EUR][1000 genomes]
rs6941354	0.88[EUR][1000 genomes]
rs7454011	0.86[EUR][1000 genomes]
rs7748911	0.88[EUR][1000 genomes]
rs7749397	0.90[EUR][1000 genomes]
rs7758155	0.83[EUR][1000 genomes]
rs7764980	0.88[EUR][1000 genomes]
rs7766346	0.88[EUR][1000 genomes]
rs7768091	0.88[EUR][1000 genomes]
rs7770607	0.88[EUR][1000 genomes]
rs7773697	0.86[EUR][1000 genomes]
rs9295483	0.88[EUR][1000 genomes]
rs9350287	0.88[EUR][1000 genomes]
rs9350295	0.88[EUR][1000 genomes]
rs9356751	0.81[EUR][1000 genomes]
rs9356753	0.88[EUR][1000 genomes]
rs9358367	0.93[EUR][1000 genomes]
rs9358373	0.88[EUR][1000 genomes]
rs9358374	0.88[EUR][1000 genomes]
rs9358375	0.88[EUR][1000 genomes]
rs9366364	0.88[EUR][1000 genomes]
rs9366368	0.83[EUR][1000 genomes]
rs9366369	0.83[EUR][1000 genomes]
rs9368235	0.88[EUR][1000 genomes]
rs9368254	0.86[EUR][1000 genomes]
rs9368255	0.83[EUR][1000 genomes]
rs9368258	0.83[EUR][1000 genomes]
rs9460566	0.88[EUR][1000 genomes]
rs9460567	0.88[EUR][1000 genomes]
rs9465919	0.88[EUR][1000 genomes]
rs9465922	0.90[EUR][1000 genomes]
rs9465924	0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)