SNP Report

Basic Infomation

Name	rs62397656 dbSNP
Location	chr:6,20735017
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10484631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16884185	0.85[EUR][1000 genomes]
rs16884190	0.85[EUR][1000 genomes]
rs17839864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2473648	0.85[EUR][1000 genomes]
rs2473649	0.85[EUR][1000 genomes]
rs2745927	0.85[EUR][1000 genomes]
rs2745928	0.85[EUR][1000 genomes]
rs2819988	0.81[EUR][1000 genomes]
rs2819989	0.83[EUR][1000 genomes]
rs2819991	0.85[EUR][1000 genomes]
rs2819992	0.88[EUR][1000 genomes]
rs2819995	0.85[EUR][1000 genomes]
rs2819999	0.83[EUR][1000 genomes]
rs41272361	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4437452	0.83[EUR][1000 genomes]
rs56935114	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57498505	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58332063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58839693	0.90[AMR][1000 genomes]
rs61484729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62397654	0.83[EUR][1000 genomes]
rs62397657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62397658	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62399260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62399261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62399283	0.83[EUR][1000 genomes]
rs62399284	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62399286	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62399287	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62399288	0.83[EUR][1000 genomes]
rs62399291	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62399293	0.85[EUR][1000 genomes]
rs62399294	0.85[EUR][1000 genomes]
rs62399295	0.85[EUR][1000 genomes]
rs62399296	0.83[EUR][1000 genomes]
rs62399297	0.85[EUR][1000 genomes]
rs62399298	0.83[EUR][1000 genomes]
rs62399299	0.85[EUR][1000 genomes]
rs62399300	0.83[EUR][1000 genomes]
rs62399302	0.85[EUR][1000 genomes]
rs62399303	0.85[EUR][1000 genomes]
rs62399305	0.85[EUR][1000 genomes]
rs62399306	0.85[EUR][1000 genomes]
rs62399307	0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)