SNP Report

Basic Infomation

Name	rs62399260 dbSNP
Location	chr:6,20736838
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10484631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11968264	1.00[ASN][1000 genomes]
rs16884185	0.88[EUR][1000 genomes]
rs16884190	0.88[EUR][1000 genomes]
rs17839864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2473648	0.88[EUR][1000 genomes]
rs2473649	0.88[EUR][1000 genomes]
rs2745927	0.88[EUR][1000 genomes]
rs2745928	0.88[EUR][1000 genomes]
rs2819988	0.84[EUR][1000 genomes]
rs2819989	0.85[EUR][1000 genomes]
rs2819991	0.88[EUR][1000 genomes]
rs2819992	0.90[EUR][1000 genomes]
rs2819995	0.88[EUR][1000 genomes]
rs2819999	0.85[EUR][1000 genomes]
rs41272361	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4437452	0.85[EUR][1000 genomes]
rs4710947	0.80[EUR][1000 genomes]
rs4712541	0.80[EUR][1000 genomes]
rs4712543	0.80[EUR][1000 genomes]
rs56935114	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57498505	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58332063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58839693	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61484729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62397654	0.80[EUR][1000 genomes]
rs62397656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62397657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62397658	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62399261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62399283	0.85[EUR][1000 genomes]
rs62399284	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62399286	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62399287	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62399288	0.85[EUR][1000 genomes]
rs62399291	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62399293	0.88[EUR][1000 genomes]
rs62399294	0.88[EUR][1000 genomes]
rs62399295	0.88[EUR][1000 genomes]
rs62399296	0.85[EUR][1000 genomes]
rs62399297	0.88[EUR][1000 genomes]
rs62399298	0.85[EUR][1000 genomes]
rs62399299	0.88[EUR][1000 genomes]
rs62399300	0.85[EUR][1000 genomes]
rs62399302	0.88[EUR][1000 genomes]
rs62399303	0.88[EUR][1000 genomes]
rs62399305	0.88[EUR][1000 genomes]
rs62399306	0.88[EUR][1000 genomes]
rs62399307	0.88[EUR][1000 genomes]
rs6456372	0.80[EUR][1000 genomes]
rs6456373	0.80[EUR][1000 genomes]
rs6900375	0.80[EUR][1000 genomes]
rs6929760	0.80[EUR][1000 genomes]
rs9358367	0.80[EUR][1000 genomes]
rs9465870	1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)