SNP Report
Basic Infomation
| Name | rs9368258 dbSNP |
|---|---|
| Location | chr:6,20917657 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 110)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946409 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1498425 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1498427 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16884185 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs16884190 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2328550 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2328551 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2473648 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2473649 | 0.83[EUR][1000 genomes] |
| rs2745927 | 0.83[EUR][1000 genomes] |
| rs2745928 | 0.83[EUR][1000 genomes] |
| rs2819989 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes] |
| rs2819991 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2819992 | 0.81[EUR][1000 genomes] |
| rs2819995 | 0.83[EUR][1000 genomes] |
| rs2819999 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2876583 | 1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41272361 | 0.83[EUR][1000 genomes] |
| rs4236004 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4272215 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4299818 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4330531 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4334975 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4383807 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4413596 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs4437452 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4524599 | 0.87[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4568440 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4607421 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4618519 | 1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4710947 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4710949 | 0.87[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4710951 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4710952 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4710953 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4710955 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4710957 | 0.89[EUR][1000 genomes] |
| rs4712541 | 0.83[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4712543 | 0.83[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4712550 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4712566 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4712567 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56935114 | 0.83[EUR][1000 genomes] |
| rs57498505 | 0.83[EUR][1000 genomes] |
| rs58332063 | 0.81[EUR][1000 genomes] |
| rs62397654 | 0.83[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62397658 | 0.81[EUR][1000 genomes] |
| rs62399261 | 0.81[EUR][1000 genomes] |
| rs62399283 | 0.85[EUR][1000 genomes] |
| rs62399284 | 0.83[EUR][1000 genomes] |
| rs62399286 | 0.83[EUR][1000 genomes] |
| rs62399287 | 0.83[EUR][1000 genomes] |
| rs62399288 | 0.83[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62399291 | 0.83[EUR][1000 genomes] |
| rs62399293 | 0.83[EUR][1000 genomes] |
| rs62399294 | 0.83[EUR][1000 genomes] |
| rs62399295 | 0.83[EUR][1000 genomes] |
| rs62399296 | 0.83[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62399297 | 0.83[EUR][1000 genomes] |
| rs62399298 | 0.83[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62399299 | 0.83[EUR][1000 genomes] |
| rs62399300 | 0.83[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62399301 | 0.83[AFR][1000 genomes] |
| rs62399302 | 0.83[EUR][1000 genomes] |
| rs62399303 | 0.83[EUR][1000 genomes] |
| rs62399305 | 0.83[EUR][1000 genomes] |
| rs62399306 | 0.83[EUR][1000 genomes] |
| rs62399307 | 0.83[EUR][1000 genomes] |
| rs6456372 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6456373 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes] |
| rs6456375 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6456377 | 0.84[EUR][1000 genomes] |
| rs6456378 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6456380 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6900375 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6903176 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6909682 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6910032 | 1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6929760 | 0.90[EUR][1000 genomes] |
| rs6941354 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7454011 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs7747830 | 1.00[CEU][hapmap] |
| rs7748911 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7749397 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs7758155 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7764980 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7766346 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7768091 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7770607 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7773697 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs9295483 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9350287 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9350295 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9356753 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs9358367 | 0.83[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9358373 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9358374 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9358375 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9366364 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9366368 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9366369 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9366370 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9368235 | 0.87[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9368254 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9368255 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9460566 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9460567 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9465919 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9465922 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs9465924 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014