SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11700134	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2233092	1.00[LWK][hapmap]
rs2233899	1.00[LWK][hapmap]
rs2267858	1.00[LWK][hapmap]
rs2743307	1.00[LWK][hapmap]
rs2743337	1.00[LWK][hapmap]
rs6094061	1.00[LWK][hapmap]
rs6103955	1.00[LWK][hapmap]
rs6124688	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6124690	0.81[CHB][hapmap]
rs6130753	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6130756	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6130760	0.81[CHB][hapmap]
rs6130761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6130762	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6130763	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6130767	0.86[AFR][1000 genomes]
rs6130784	0.81[GIH][hapmap]
rs734685	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs927000	1.00[LWK][hapmap]

rSNP related genes

Symbol	Regulation type
WFDC5	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 3)