SNP Report
Basic Infomation
| Name | rs61265760 dbSNP |
|---|---|
| Location | chr:9,139343826 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11555399 | 0.81[AFR][1000 genomes] |
| rs35774078 | 0.84[EUR][1000 genomes] |
| rs36064831 | 1.00[EUR][1000 genomes] |
| rs41306736 | 0.83[AFR][1000 genomes] |
| rs45509099 | 0.83[AFR][1000 genomes] |
| rs45542334 | 0.81[AFR][1000 genomes] |
| rs45568431 | 0.81[AFR][1000 genomes] |
| rs56406248 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57479787 | 0.83[AFR][1000 genomes] |
| rs59966630 | 0.83[AFR][1000 genomes] |
| rs60316819 | 0.83[AFR][1000 genomes] |
| rs60543770 | 0.92[EUR][1000 genomes] |
| rs60640016 | 1.00[EUR][1000 genomes] |
| rs60910521 | 0.83[AFR][1000 genomes] |
| rs6560631 | 0.83[AFR][1000 genomes] |
| rs7022785 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7037079 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73670273 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73670282 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73670288 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7854648 | 0.83[AFR][1000 genomes] |
| rs7855912 | 0.83[AFR][1000 genomes] |
| rs7861550 | 0.83[AFR][1000 genomes] |
| rs7861813 | 0.83[AFR][1000 genomes] |
| rs7865065 | 0.81[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SEC16A | Proximal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| SEC16A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014