SNP Report
Basic Infomation
| Name | rs6560631 dbSNP |
|---|---|
| Location | chr:9,139369200 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11555399 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41306736 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs45509099 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs45517843 | 0.94[AFR][1000 genomes] |
| rs45542334 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs45564338 | 1.00[AMR][1000 genomes] |
| rs45568431 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57380853 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57479787 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59410427 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59966630 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60316819 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60910521 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61265760 | 0.83[AFR][1000 genomes] |
| rs7022785 | 0.90[AFR][1000 genomes] |
| rs7854648 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7855912 | 0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7861550 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7861813 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7865065 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR126 | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| SEC16A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014