SNP Report
Basic Infomation
| Name | rs6104272 dbSNP |
|---|---|
| Location | chr:20,44280386 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11697671 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4434050 | 0.93[EUR][1000 genomes] |
| rs6017649 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6032349 | 0.93[EUR][1000 genomes] |
| rs6032350 | 0.93[EUR][1000 genomes] |
| rs6032389 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6032402 | 0.90[ASN][1000 genomes] |
| rs6032403 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6032421 | 0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6032436 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6032440 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6094182 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6104239 | 0.93[EUR][1000 genomes] |
| rs6104289 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6104296 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7271419 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC10A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014