SNP Report
Basic Infomation
| Name | rs60874066 dbSNP |
|---|---|
| Location | chr:12,48896529 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168584 | 0.87[EUR][1000 genomes] |
| rs11612896 | 0.87[EUR][1000 genomes] |
| rs12318285 | 0.87[ASN][1000 genomes] |
| rs12424337 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12425518 | 0.95[EUR][1000 genomes] |
| rs12425950 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17123109 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17123138 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4146339 | 0.84[EUR][1000 genomes] |
| rs4146340 | 0.84[EUR][1000 genomes] |
| rs4760714 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56053566 | 0.84[ASN][1000 genomes] |
| rs56796388 | 0.87[EUR][1000 genomes] |
| rs58537022 | 0.81[AFR][1000 genomes] |
| rs73298779 | 0.82[AFR][1000 genomes] |
| rs73298787 | 0.83[AFR][1000 genomes] |
| rs73298791 | 0.82[AFR][1000 genomes] |
| rs73298792 | 0.83[AFR][1000 genomes] |
| rs73300718 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73302549 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73302561 | 0.95[EUR][1000 genomes] |
| rs73302563 | 0.95[EUR][1000 genomes] |
| rs74087209 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74090293 | 0.83[AFR][1000 genomes] |
| rs9788163 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8S1 | Proximal transcriptional regulation |
| ENSG00000258121 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014