SNP Report
Basic Infomation
| Name | rs12425518 dbSNP |
|---|---|
| Location | chr:12,48920006 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168584 | 0.93[EUR][1000 genomes] |
| rs11168601 | 0.82[EUR][1000 genomes] |
| rs11611327 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.80[ASN][1000 genomes] |
| rs11612896 | 0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs11829869 | 0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap] |
| rs11832311 | 0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap] |
| rs12424337 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12425950 | 0.95[EUR][1000 genomes] |
| rs17123105 | 0.82[EUR][1000 genomes] |
| rs17123106 | 0.82[EUR][1000 genomes] |
| rs17123108 | 0.82[EUR][1000 genomes] |
| rs17123109 | 1.00[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs17123138 | 0.82[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs4146339 | 0.89[EUR][1000 genomes] |
| rs4146340 | 0.96[YRI][hapmap];0.89[EUR][1000 genomes] |
| rs4620769 | 0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap] |
| rs4760714 | 0.95[EUR][1000 genomes] |
| rs56796388 | 0.93[EUR][1000 genomes] |
| rs60874066 | 0.95[EUR][1000 genomes] |
| rs7306166 | 0.82[CEU][hapmap] |
| rs73300718 | 0.89[EUR][1000 genomes] |
| rs73302549 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73302561 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73302563 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74087209 | 0.95[EUR][1000 genomes] |
| rs7966826 | 0.94[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap] |
| rs9788163 | 0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CACNB3 | Distal transcriptional regulation |
| OR8S1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014