SNP Report
Basic Infomation
| Name | rs17123138 dbSNP |
|---|---|
| Location | chr:12,48936290 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12318285 | 0.86[CHB][hapmap] |
| rs12424337 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12425518 | 0.82[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs12425950 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17123109 | 0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2731072 | 0.82[CHB][hapmap] |
| rs4760714 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs60874066 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7306166 | 1.00[CEU][hapmap] |
| rs73300718 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73302549 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73302561 | 0.85[EUR][1000 genomes] |
| rs73302563 | 0.85[EUR][1000 genomes] |
| rs74087209 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9788163 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR11M1P | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014