SNP Report
Basic Infomation
| Name | rs608693 dbSNP |
|---|---|
| Location | chr:10,30734971 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1042058 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1751648 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2480299 | 0.89[AFR][1000 genomes] |
| rs2489847 | 0.89[AFR][1000 genomes] |
| rs2907 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs303426 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs303427 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs303428 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs303434 | 0.86[EUR][1000 genomes] |
| rs303437 | 0.86[EUR][1000 genomes] |
| rs303438 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs303446 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs303448 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs306587 | 0.85[EUR][1000 genomes] |
| rs306589 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs602097 | 0.84[AFR][1000 genomes] |
| rs684395 | 0.87[EUR][1000 genomes] |
| rs9338188 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP3K8 | Distal transcriptional regulation |
| MAP3K8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014