SNP Report
Name | rs1042058   dbSNP |
---|---|
Location | chr:10,30728101 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs2250077 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs2250714 | 0.84[EUR][1000 genomes] |
rs2253585 | 0.92[CEU][hapmap];0.84[EUR][1000 genomes] |
rs2480277 | 0.91[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2480280 | 0.84[EUR][1000 genomes] |
rs2489864 | 0.83[EUR][1000 genomes] |
rs2907 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs303426 | 0.80[CEU][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes] |
rs303427 | 0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs303428 | 0.80[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs303429 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs303430 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs303434 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs303437 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs303438 | 0.80[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes] |
rs303446 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs303448 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs306587 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs306589 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs588931 | 0.88[YRI][hapmap] |
rs602097 | 0.88[YRI][hapmap] |
rs608693 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs684395 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs928055 | 0.83[ASN][1000 genomes] |
rs9338188 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAP3K8 | Proximal transcriptional regulation |
MAP3K8 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014