SNP Report

Basic Infomation

Name	rs1042058 dbSNP
Location	chr:10,30728101
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2250077	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2250714	0.84[EUR][1000 genomes]
rs2253585	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2480277	0.91[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2480280	0.84[EUR][1000 genomes]
rs2489864	0.83[EUR][1000 genomes]
rs2907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303426	0.80[CEU][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs303427	0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs303428	0.80[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs303429	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs303430	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs303434	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs303437	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs303438	0.80[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs303446	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303448	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs306587	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs306589	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs588931	0.88[YRI][hapmap]
rs602097	0.88[YRI][hapmap]
rs608693	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs684395	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs928055	0.83[ASN][1000 genomes]
rs9338188	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAP3K8	Proximal transcriptional regulation
MAP3K8	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)