SNP Report
Basic Infomation
| Name | rs306587 dbSNP |
|---|---|
| Location | chr:10,30722908 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1042058 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1754245 | 0.80[EUR][1000 genomes] |
| rs2250077 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2250714 | 0.85[EUR][1000 genomes] |
| rs2253585 | 0.85[EUR][1000 genomes] |
| rs2480277 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2480280 | 0.85[EUR][1000 genomes] |
| rs2489864 | 0.83[EUR][1000 genomes] |
| rs2907 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs303429 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs303430 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs303434 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs303437 | 0.80[EUR][1000 genomes] |
| rs303446 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs303448 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs306589 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs608693 | 0.85[EUR][1000 genomes] |
| rs684395 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9338188 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP3K8 | Proximal transcriptional regulation |
| CSDE1 | Distal transcriptional regulation |
| ERH | Distal transcriptional regulation |
| SLC39A9 | Distal transcriptional regulation |
| SERP1 | Distal transcriptional regulation |
| EIF2A | Distal transcriptional regulation |
| ENSG00000228800 | Distal transcriptional regulation |
| HSF2BP | Distal transcriptional regulation |
| RRP1B | Distal transcriptional regulation |
| MTPAP | Distal transcriptional regulation |
| MAP3K8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014