SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1042058	0.80[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1751648	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.90[ASN][1000 genomes]
rs2480299	0.80[EUR][1000 genomes]
rs2489847	0.80[EUR][1000 genomes]
rs2907	0.83[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs303426	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs303427	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303435	0.85[CEU][hapmap]
rs303438	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.97[ASN][1000 genomes]
rs303444	0.86[CEU][hapmap]
rs303446	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs303448	0.82[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs306589	0.80[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs598672	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs602097	0.83[CEU][hapmap]
rs608693	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs619864	0.87[CEU][hapmap]
rs684395	0.80[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs9338188	0.82[CEU][hapmap];0.83[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
MAP3K8	Distal transcriptional regulation
MAP3K8	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)