SNP Report
Basic Infomation
| Name | rs60647009 dbSNP |
|---|---|
| Location | chr:11,63957655 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2246552 | 1.00[AMR][1000 genomes] |
| rs2254599 | 0.85[AMR][1000 genomes] |
| rs2254709 | 0.85[AMR][1000 genomes] |
| rs2325785 | 1.00[AMR][1000 genomes] |
| rs2429457 | 1.00[AFR][1000 genomes] |
| rs2508208 | 0.89[AFR][1000 genomes] |
| rs2515239 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2515240 | 0.97[AFR][1000 genomes] |
| rs2622413 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs2622414 | 1.00[AMR][1000 genomes] |
| rs2622415 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622416 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622421 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622423 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622431 | 0.85[AMR][1000 genomes] |
| rs2701525 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2701526 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2701528 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2701529 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2701532 | 1.00[AMR][1000 genomes] |
| rs2701535 | 1.00[AMR][1000 genomes] |
| rs2701538 | 1.00[AMR][1000 genomes] |
| rs2845587 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2845589 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2845591 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2845595 | 1.00[AMR][1000 genomes] |
| rs2845598 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35525149 | 1.00[AFR][1000 genomes] |
| rs4294564 | 1.00[AFR][1000 genomes] |
| rs4587731 | 1.00[AFR][1000 genomes] |
| rs4980526 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs611637 | 0.93[AFR][1000 genomes] |
| rs620818 | 0.93[AFR][1000 genomes] |
| rs633557 | 0.95[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| ENSG00000256116 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014