SNP Report
Basic Infomation
| Name | rs2429457 dbSNP |
|---|---|
| Location | chr:11,63993534 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2246552 | 0.86[YRI][hapmap] |
| rs2254599 | 0.85[YRI][hapmap] |
| rs2254709 | 0.86[YRI][hapmap] |
| rs2508208 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2510067 | 0.85[AMR][1000 genomes] |
| rs2515239 | 1.00[AFR][1000 genomes] |
| rs2515240 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622413 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs2622415 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs2622416 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs2622421 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs2622423 | 0.87[AFR][1000 genomes] |
| rs2622431 | 0.86[YRI][hapmap] |
| rs2701525 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2701526 | 0.83[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2701528 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2701529 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs2701535 | 0.86[YRI][hapmap] |
| rs2701538 | 0.86[YRI][hapmap] |
| rs2845587 | 1.00[AFR][1000 genomes] |
| rs2845589 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs2845591 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs2845595 | 0.84[YRI][hapmap] |
| rs2845598 | 1.00[AFR][1000 genomes] |
| rs35525149 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4294564 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4379854 | 0.86[YRI][hapmap] |
| rs4587731 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4980526 | 1.00[AFR][1000 genomes] |
| rs605187 | 1.00[AMR][1000 genomes] |
| rs60647009 | 1.00[AFR][1000 genomes] |
| rs611637 | 0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs620818 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs633557 | 0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs633561 | 1.00[AMR][1000 genomes] |
| rs668503 | 0.85[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNAJC4 | Proximal transcriptional regulation |
| TRPT1 | Proximal transcriptional regulation |
| NUDT22 | Proximal transcriptional regulation |
| GPRC5A | Distal transcriptional regulation |
| ZNF668 | Distal transcriptional regulation |
| C9orf16 | Distal transcriptional regulation |
| NXF1 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| FAM83E | Distal transcriptional regulation |
| TRPT1 | RNA binding protein mediated regulation |
| NUDT22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014