SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2246552	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap]
rs2254599	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2254709	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2429457	0.86[YRI][hapmap]
rs2515240	0.89[ASW][hapmap];0.80[LWK][hapmap];0.86[YRI][hapmap]
rs2622413	0.89[ASW][hapmap];0.83[LWK][hapmap];0.86[YRI][hapmap]
rs2622414	1.00[YRI][hapmap]
rs2622415	0.86[YRI][hapmap]
rs2622416	0.86[YRI][hapmap]
rs2622421	0.86[YRI][hapmap]
rs2622431	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2701525	0.86[YRI][hapmap]
rs2701528	0.89[ASW][hapmap];0.83[LWK][hapmap];0.86[YRI][hapmap]
rs2701529	0.86[YRI][hapmap]
rs2701535	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2701538	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2845589	0.89[ASW][hapmap];0.83[LWK][hapmap];0.86[YRI][hapmap]
rs2845591	0.89[ASW][hapmap];0.87[LWK][hapmap];0.86[YRI][hapmap]
rs2845595	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2845881	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs2845888	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MACROD1	Distal transcriptional regulation
MACROD1	RNA binding protein mediated regulation
FLRT1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 3)