SNP Report
Basic Infomation
| Name | rs620818 dbSNP |
|---|---|
| Location | chr:11,64018341 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2429457 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2508208 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2510067 | 0.85[AMR][1000 genomes] |
| rs2515239 | 0.93[AFR][1000 genomes] |
| rs2515240 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2622413 | 0.85[AFR][1000 genomes] |
| rs2622421 | 0.84[AFR][1000 genomes] |
| rs2622423 | 0.81[AFR][1000 genomes] |
| rs2701525 | 0.93[AFR][1000 genomes] |
| rs2701526 | 0.93[AFR][1000 genomes] |
| rs2701528 | 0.93[AFR][1000 genomes] |
| rs2845587 | 0.93[AFR][1000 genomes] |
| rs2845589 | 0.84[AFR][1000 genomes] |
| rs2845598 | 0.93[AFR][1000 genomes] |
| rs35525149 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4294564 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4587731 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4980526 | 0.93[AFR][1000 genomes] |
| rs605187 | 1.00[AMR][1000 genomes] |
| rs60647009 | 0.93[AFR][1000 genomes] |
| rs611637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs633557 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs633561 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs668503 | 0.85[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLCB3 | Proximal transcriptional regulation |
| PPP1R14B | Proximal transcriptional regulation |
| ENSG00000257086 | Proximal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| MTA2 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014