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rVarBase
SNP Report
Basic Infomation
Name
rs57279567  
dbSNP
Location
chr:22,39731742
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12170171
0.82[EUR][1000 genomes]
rs12483879
0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12483923
0.82[EUR][1000 genomes]
rs12483932
0.84[EUR][1000 genomes]
rs12484030
0.84[EUR][1000 genomes]
rs17000979
0.84[EUR][1000 genomes]
rs17000981
0.84[EUR][1000 genomes]
rs17305131
0.84[EUR][1000 genomes]
rs58599024
0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61092554
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7285952
0.95[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
RPL3
Distal transcriptional regulation
SNORD83A
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)