SNP Report
Basic Infomation
| Name | rs12484030 dbSNP |
|---|---|
| Location | chr:22,39712936 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12170171 | 0.93[EUR][1000 genomes] |
| rs12483879 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs12483923 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12483932 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17000979 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17000981 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17304621 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17305131 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4821882 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs57279567 | 0.84[EUR][1000 genomes] |
| rs58599024 | 0.93[EUR][1000 genomes] |
| rs61092554 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPL3 | Proximal transcriptional regulation |
| SNORD83B | Proximal transcriptional regulation |
| SNORD83A | Proximal transcriptional regulation |
| CCAR1 | Distal transcriptional regulation |
| CHORDC1 | Distal transcriptional regulation |
| DNAL4 | Distal transcriptional regulation |
| SUN2 | Distal transcriptional regulation |
| CBX7 | Distal transcriptional regulation |
| ENSG00000224794 | Distal transcriptional regulation |
| ATF4 | Distal transcriptional regulation |
| ENSG00000227188 | Distal transcriptional regulation |
| MGAT3 | Distal transcriptional regulation |
| GTPBP1 | Distal transcriptional regulation |
| FUNDC2P4 | Distal transcriptional regulation |
| RPS19BP1 | Distal transcriptional regulation |
| TAB1 | Distal transcriptional regulation |
| PDGFB | Distal transcriptional regulation |
| ENSG00000214854 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014