SNP Report
Basic Infomation
| Name | rs12483879 dbSNP |
|---|---|
| Location | chr:22,39719148 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12170171 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12483923 | 0.96[EUR][1000 genomes] |
| rs12483932 | 1.00[EUR][1000 genomes] |
| rs12484030 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17000979 | 1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17000981 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17304621 | 0.96[EUR][1000 genomes] |
| rs17305131 | 1.00[EUR][1000 genomes] |
| rs4821882 | 0.84[EUR][1000 genomes] |
| rs57279567 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs58599024 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61092554 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPL3 | Proximal transcriptional regulation |
| SNORD43 | Proximal transcriptional regulation |
| RPL3 | Distal transcriptional regulation |
| SNORD43 | Distal transcriptional regulation |
| SYNGR1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014