SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12170171	0.93[EUR][1000 genomes]
rs12483879	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12483923	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12483932	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12484030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000981	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17304621	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17305131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4821882	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57279567	0.84[EUR][1000 genomes]
rs58599024	0.93[EUR][1000 genomes]
rs61092554	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ATF4	Distal transcriptional regulation
PDGFB	Distal transcriptional regulation
ENSG00000214854	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 3)