SNP Report
Basic Infomation
| Name | rs56142004 dbSNP |
|---|---|
| Location | chr:11,62100799 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 87)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1043785 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1043789 | 0.81[EUR][1000 genomes] |
| rs10501332 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10897261 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10897269 | 0.89[EUR][1000 genomes] |
| rs11231044 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11231055 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11231067 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11231068 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11231070 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11231071 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11231072 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11231076 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11820258 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11824690 | 0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12270299 | 0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12274086 | 0.92[EUR][1000 genomes] |
| rs12275541 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12278088 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12281053 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12282077 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12283977 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12284476 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12284539 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12285902 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12286415 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12292642 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12419894 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12420825 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13377409 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1534589 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17157147 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17585235 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17585270 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1969544 | 0.90[ASN][1000 genomes] |
| rs2155996 | 0.82[EUR][1000 genomes] |
| rs2277281 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2302359 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2302361 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2463823 | 1.00[ASN][1000 genomes] |
| rs2463826 | 0.93[ASN][1000 genomes] |
| rs2513055 | 0.95[ASN][1000 genomes] |
| rs2513740 | 0.96[ASN][1000 genomes] |
| rs2513748 | 1.00[ASN][1000 genomes] |
| rs2958532 | 0.87[EUR][1000 genomes] |
| rs3018620 | 0.85[EUR][1000 genomes] |
| rs34075806 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34114318 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34853836 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34950346 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34956831 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs35015521 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35105438 | 0.82[ASN][1000 genomes] |
| rs35341808 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35499940 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35737806 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3741245 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4281490 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4309171 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4432028 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4963295 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4963296 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4963297 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4963298 | 0.83[ASN][1000 genomes] |
| rs4963497 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4963498 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4963499 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4963500 | 0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4963501 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4963502 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4963504 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs55676140 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55906750 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs57066953 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs66605721 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs67149710 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs67821209 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7109277 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7111902 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7116792 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7118241 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7128883 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7130122 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73494068 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7928732 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7929433 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7936165 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASRGL1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014