SNP Report

Basic Infomation

Name	rs4309171 dbSNP
Location	chr:11,62069132
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 79)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1043785	0.84[EUR][1000 genomes]
rs10501332	0.95[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10897261	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10897269	0.82[EUR][1000 genomes]
rs11231044	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11231055	0.88[EUR][1000 genomes]
rs11231067	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs11231068	0.86[EUR][1000 genomes]
rs11231070	0.86[EUR][1000 genomes]
rs11231071	0.85[EUR][1000 genomes]
rs11231072	0.84[EUR][1000 genomes]
rs11231073	0.81[JPT][hapmap]
rs11231076	0.83[EUR][1000 genomes]
rs11820258	0.86[EUR][1000 genomes]
rs11824690	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs12270299	0.91[EUR][1000 genomes]
rs12274086	0.86[EUR][1000 genomes]
rs12275541	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12278088	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12281053	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12282077	0.88[EUR][1000 genomes]
rs12283977	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12284476	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12284539	0.86[EUR][1000 genomes]
rs12285902	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12286415	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12292642	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs12419894	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12420825	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13377409	0.91[EUR][1000 genomes]
rs1534589	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585235	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17585270	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2277281	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2302359	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2302361	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs2513082	0.98[ASN][1000 genomes]
rs2958532	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs3018620	0.95[CEU][hapmap]
rs34075806	0.86[EUR][1000 genomes]
rs34114318	0.86[EUR][1000 genomes]
rs34853836	0.86[EUR][1000 genomes]
rs34950346	0.86[EUR][1000 genomes]
rs34956831	0.86[EUR][1000 genomes]
rs35015521	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35341808	0.86[EUR][1000 genomes]
rs35499940	0.86[EUR][1000 genomes]
rs35737806	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3741245	0.95[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4281490	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4432028	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs4963295	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963296	0.96[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963297	0.87[EUR][1000 genomes]
rs4963497	0.85[EUR][1000 genomes]
rs4963498	0.91[EUR][1000 genomes]
rs4963499	0.95[CEU][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs4963500	0.82[EUR][1000 genomes]
rs4963501	0.87[EUR][1000 genomes]
rs4963502	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963504	0.86[EUR][1000 genomes]
rs55676140	0.91[EUR][1000 genomes]
rs55906750	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56142004	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57066953	0.92[EUR][1000 genomes]
rs66605721	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67149710	0.87[EUR][1000 genomes]
rs67821209	0.92[EUR][1000 genomes]
rs7109277	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7111902	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7116792	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7118241	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7128883	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7130122	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73494068	0.88[EUR][1000 genomes]
rs7928732	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7929433	0.84[EUR][1000 genomes]
rs7936165	0.95[CEU][hapmap];0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SCGB1D4	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)