SNP Report

Basic Infomation

Name	rs558864 dbSNP
Location	chr:11,64107143
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1152226	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1318165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs477074	0.91[AFR][1000 genomes]
rs477909	0.83[AMR][1000 genomes]
rs483515	0.83[AMR][1000 genomes]
rs484384	0.83[AMR][1000 genomes]
rs488760	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs494403	0.84[MKK][hapmap];0.83[AMR][1000 genomes]
rs512372	0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs513264	0.83[AMR][1000 genomes]
rs545916	0.83[AMR][1000 genomes]
rs550819	0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs558105	0.81[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564687	0.83[AMR][1000 genomes]
rs565221	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs566049	0.87[ASW][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs571379	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594241	0.89[AFR][1000 genomes]
rs601845	0.83[AMR][1000 genomes]
rs614047	1.00[LWK][hapmap];0.81[MKK][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs620645	0.82[YRI][hapmap]
rs632439	0.93[YRI][hapmap]
rs648220	0.83[AMR][1000 genomes]
rs649463	0.83[AMR][1000 genomes]
rs652611	0.87[ASW][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs676931	0.87[ASW][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs681797	1.00[MKK][hapmap];0.83[AMR][1000 genomes]
rs7938623	0.82[YRI][hapmap]
rs7941847	0.87[ASW][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CCDC88B	Proximal transcriptional regulation
TEX40	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
ENSG00000236935	Distal transcriptional regulation
FERMT3	Distal transcriptional regulation
FKBP2	Distal transcriptional regulation
TRMT112	Distal transcriptional regulation
PRDX5	Distal transcriptional regulation
CCDC88B	Distal transcriptional regulation
STIP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)