SNP Report
Basic Infomation
| Name | rs494403 dbSNP |
|---|---|
| Location | chr:11,64143346 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1152226 | 0.83[AMR][1000 genomes] |
| rs1318165 | 0.83[AMR][1000 genomes] |
| rs477909 | 1.00[AMR][1000 genomes] |
| rs483515 | 1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[AMR][1000 genomes] |
| rs484384 | 1.00[AMR][1000 genomes] |
| rs488760 | 0.83[AMR][1000 genomes] |
| rs497595 | 0.87[AFR][1000 genomes] |
| rs499455 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.84[AFR][1000 genomes] |
| rs512372 | 0.83[AMR][1000 genomes] |
| rs513264 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs545916 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs550819 | 0.83[AMR][1000 genomes] |
| rs558105 | 0.83[AMR][1000 genomes] |
| rs558864 | 0.84[MKK][hapmap];0.83[AMR][1000 genomes] |
| rs564687 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs565221 | 0.87[ASW][hapmap];0.84[MKK][hapmap];0.83[AMR][1000 genomes] |
| rs566049 | 0.83[AMR][1000 genomes] |
| rs571379 | 0.83[AMR][1000 genomes] |
| rs601845 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs614047 | 0.83[AMR][1000 genomes] |
| rs632654 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs648220 | 1.00[AMR][1000 genomes] |
| rs649463 | 1.00[AMR][1000 genomes] |
| rs652611 | 0.83[AMR][1000 genomes] |
| rs676931 | 0.83[AMR][1000 genomes] |
| rs681797 | 1.00[ASW][hapmap];0.92[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7941847 | 0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCDC88B | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| MIR1237 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| STK4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014