SNP Report
Basic Infomation
| Name | rs550819 dbSNP |
|---|---|
| Location | chr:11,64085074 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1152226 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1318165 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2510067 | 0.80[AFR][1000 genomes] |
| rs477074 | 0.80[AFR][1000 genomes] |
| rs477909 | 0.83[AMR][1000 genomes] |
| rs483515 | 0.83[AMR][1000 genomes] |
| rs484384 | 0.83[AMR][1000 genomes] |
| rs488760 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs494403 | 0.83[AMR][1000 genomes] |
| rs512372 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs513264 | 0.83[AMR][1000 genomes] |
| rs545916 | 0.83[AMR][1000 genomes] |
| rs558105 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs558864 | 0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs564687 | 0.83[AMR][1000 genomes] |
| rs565221 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs566049 | 0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs571379 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs594241 | 0.86[AFR][1000 genomes] |
| rs601845 | 0.83[AMR][1000 genomes] |
| rs614047 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs648220 | 0.83[AMR][1000 genomes] |
| rs649463 | 0.83[AMR][1000 genomes] |
| rs652611 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs676931 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs681797 | 0.83[AMR][1000 genomes] |
| rs687735 | 0.83[AFR][1000 genomes] |
| rs7941847 | 0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRDX5 | Proximal transcriptional regulation |
| TRMT112 | Proximal transcriptional regulation |
| SLK | Distal transcriptional regulation |
| DUSP5 | Distal transcriptional regulation |
| USP36 | Distal transcriptional regulation |
| THRAP3 | Distal transcriptional regulation |
| ENSG00000207501 | Distal transcriptional regulation |
| S100A10 | Distal transcriptional regulation |
| ENSG00000224467 | Distal transcriptional regulation |
| TANK | Distal transcriptional regulation |
| GTF2E1 | Distal transcriptional regulation |
| RABL3 | Distal transcriptional regulation |
| BAG2 | Distal transcriptional regulation |
| ENSG00000226803 | Distal transcriptional regulation |
| SNX3 | Distal transcriptional regulation |
| CNTRL | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| AHNAK | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| ARHGEF19 | Distal transcriptional regulation |
| CANX | Distal transcriptional regulation |
| HMGB3P22 | Distal transcriptional regulation |
| ZNF195 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014