SNP Report
Basic Infomation
| Name | rs502017 dbSNP |
|---|---|
| Location | chr:11,63447230 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1199383 | 1.00[AMR][1000 genomes] |
| rs1301131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17158455 | 1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs17158456 | 1.00[YRI][hapmap] |
| rs2510524 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2957207 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs2957251 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2957254 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2957255 | 1.00[AMR][1000 genomes] |
| rs2957256 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2959888 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35375575 | 1.00[AMR][1000 genomes] |
| rs480271 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs489327 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs489580 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs496346 | 1.00[AFR][1000 genomes] |
| rs496354 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs499942 | 1.00[YRI][hapmap] |
| rs501095 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs502717 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs509932 | 1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs512073 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs516068 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs516981 | 1.00[AMR][1000 genomes] |
| rs518304 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs518453 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs519374 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs520640 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs528770 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs533130 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs538627 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs540034 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs542124 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs554661 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs560610 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs569657 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs573083 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57658167 | 1.00[AMR][1000 genomes] |
| rs59235496 | 1.00[AMR][1000 genomes] |
| rs622400 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs653841 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs694024 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RTN3 | Proximal transcriptional regulation |
| ATL3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014