SNP Report

Basic Infomation

Name	rs560610 dbSNP
Location	chr:11,63521579
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1199383	1.00[AMR][1000 genomes]
rs1301131	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2510524	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957251	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957254	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957255	1.00[AMR][1000 genomes]
rs2957256	1.00[AMR][1000 genomes]
rs2959888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs496346	0.86[AFR][1000 genomes]
rs496354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs501095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502017	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502717	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs512073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516981	1.00[AMR][1000 genomes]
rs518304	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs518453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs519374	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs520640	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs528770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs533130	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs538627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs540034	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs542124	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs554092	0.93[AFR][1000 genomes]
rs554661	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs569657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs573083	1.00[AMR][1000 genomes]
rs622400	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs694024	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RTN3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)