SNP Report
Basic Infomation
| Name | rs17158455 dbSNP |
|---|---|
| Location | chr:11,63398677 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17158456 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17158458 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2957207 | 1.00[MKK][hapmap] |
| rs2957254 | 1.00[YRI][hapmap] |
| rs480977 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs499942 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs501095 | 1.00[YRI][hapmap] |
| rs502017 | 1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs502717 | 1.00[YRI][hapmap] |
| rs509932 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs512073 | 1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs512249 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs516068 | 1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs518304 | 1.00[YRI][hapmap] |
| rs519374 | 1.00[YRI][hapmap] |
| rs538627 | 1.00[YRI][hapmap] |
| rs542124 | 1.00[YRI][hapmap] |
| rs565324 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs569657 | 1.00[YRI][hapmap] |
| rs622400 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RTN3 | Distal transcriptional regulation |
| ATL3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014