SNP Report
Basic Infomation
| Name | rs2957207 dbSNP |
|---|---|
| Location | chr:11,63530575 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231539 | 1.00[CHD][hapmap] |
| rs11551944 | 1.00[CHD][hapmap] |
| rs1499641 | 1.00[CHD][hapmap] |
| rs17158455 | 1.00[MKK][hapmap] |
| rs34577629 | 1.00[CHD][hapmap] |
| rs4391820 | 1.00[CHD][hapmap] |
| rs4472946 | 1.00[MEX][hapmap] |
| rs502017 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs509932 | 1.00[MKK][hapmap] |
| rs512073 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs516068 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs592416 | 1.00[MEX][hapmap] |
| rs59866692 | 1.00[AMR][1000 genomes] |
| rs60791209 | 1.00[AMR][1000 genomes] |
| rs61141225 | 1.00[AMR][1000 genomes] |
| rs7111805 | 1.00[CHD][hapmap];1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ATL3 | Distal transcriptional regulation |
| C11orf84 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014