SNP Report
Basic Infomation
| Name | rs4970344 dbSNP |
|---|---|
| Location | chr:1,964848 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2465129 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2465130 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2465131 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2465132 | 0.90[AFR][1000 genomes] |
| rs2465133 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2465134 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2465135 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2488993 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2488994 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2488995 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2488996 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2710870 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2710883 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2799055 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2799066 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3121552 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3121556 | 0.88[EUR][1000 genomes] |
| rs3121577 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3121578 | 0.84[EUR][1000 genomes] |
| rs3121579 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3128097 | 0.88[AMR][1000 genomes] |
| rs4970343 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9331224 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AGRN | Proximal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| ENSG00000230415 | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
| ENSG00000224969 | Distal transcriptional regulation |
| ISG15 | Distal transcriptional regulation |
| AGRN | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014