SNP Report
Basic Infomation
| Name | rs3121556 dbSNP |
|---|---|
| Location | chr:1,961827 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2465129 | 0.81[EUR][1000 genomes] |
| rs2465130 | 0.81[EUR][1000 genomes] |
| rs2488993 | 0.81[EUR][1000 genomes] |
| rs2488994 | 0.83[EUR][1000 genomes] |
| rs2710870 | 0.95[EUR][1000 genomes] |
| rs2710875 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2710876 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2799055 | 0.81[EUR][1000 genomes] |
| rs3121578 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3121579 | 0.81[EUR][1000 genomes] |
| rs3128099 | 0.88[ASN][1000 genomes] |
| rs3128102 | 0.88[ASN][1000 genomes] |
| rs3813192 | 0.88[ASN][1000 genomes] |
| rs4970344 | 0.88[EUR][1000 genomes] |
| rs9331224 | 0.81[EUR][1000 genomes] |
| rs9331225 | 0.82[ASN][1000 genomes] |
| rs9697293 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AGRN | Distal transcriptional regulation |
| SDF4 | Distal transcriptional regulation |
| B3GALT6 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| SCNN1D | Distal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| AGRN | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014