SNP Report
Basic Infomation
| Name | rs3128102 dbSNP |
|---|---|
| Location | chr:1,982941 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10267 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2465128 | 0.80[ASN][1000 genomes] |
| rs2710875 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2710876 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2799066 | 0.86[EUR][1000 genomes] |
| rs3121552 | 0.86[EUR][1000 genomes] |
| rs3121556 | 0.88[ASN][1000 genomes] |
| rs3121578 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3128097 | 0.83[EUR][1000 genomes] |
| rs3128098 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs3128099 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3128101 | 0.83[EUR][1000 genomes] |
| rs3813192 | 1.00[ASN][1000 genomes] |
| rs9331225 | 0.94[ASN][1000 genomes] |
| rs9697293 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AGRN | Proximal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| AGRN | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014