SNP Report
Basic Infomation
| Name | rs3121579 dbSNP |
|---|---|
| Location | chr:1,975133 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13303287 | 0.83[AMR][1000 genomes] |
| rs2465129 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2465130 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2465131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2465132 | 0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2465133 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2465134 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2465135 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2488993 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2488994 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2488995 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2488996 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2710870 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2710875 | 0.84[EUR][1000 genomes] |
| rs2710876 | 0.83[EUR][1000 genomes] |
| rs2710883 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2799055 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2799066 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3121552 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3121556 | 0.81[EUR][1000 genomes] |
| rs3121577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3121578 | 0.91[EUR][1000 genomes] |
| rs3128097 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3128099 | 0.81[EUR][1000 genomes] |
| rs3128101 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4970343 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4970344 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9331224 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AGRN | Distal transcriptional regulation |
| PLEKHN1 | Distal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| ACAP3 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| ENSG00000230415 | Distal transcriptional regulation |
| ISG15 | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| AGRN | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014