SNP Report

Basic Infomation

Name	rs2465135 dbSNP
Location	chr:1,974662
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13303287	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2465129	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2465130	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2465131	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2465132	0.81[AMR][1000 genomes]
rs2465133	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2465134	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2488993	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2488994	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2488995	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2488996	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2710870	0.81[AMR][1000 genomes]
rs2710883	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2799055	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2799066	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3121552	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3121577	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3121578	0.82[EUR][1000 genomes]
rs3121579	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3128097	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3128098	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3128101	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4970343	0.88[AMR][1000 genomes]
rs4970344	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9331224	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
AGRN	Distal transcriptional regulation
PLEKHN1	Distal transcriptional regulation
HES4	Distal transcriptional regulation
ACAP3	Distal transcriptional regulation
UBE2J2	Distal transcriptional regulation
ENSG00000230415	Distal transcriptional regulation
ISG15	Distal transcriptional regulation
ENSG00000217801	Distal transcriptional regulation
AGRN	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)