SNP Report

Basic Infomation

Name	rs4899249 dbSNP
Location	chr:14,69101200
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10873215	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11158754	0.96[ASN][1000 genomes]
rs11158755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11158756	0.96[ASN][1000 genomes]
rs11629204	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12436964	0.88[JPT][hapmap]
rs12893578	0.90[CHD][hapmap];0.88[JPT][hapmap]
rs17756585	1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17756627	0.86[ASW][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2180611	0.90[CHD][hapmap];0.88[JPT][hapmap]
rs2273485	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4643253	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs4899250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4902619	0.86[ASW][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4902620	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902621	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767067	0.84[ASN][1000 genomes]
rs61987113	0.96[ASN][1000 genomes]
rs61987118	0.91[ASN][1000 genomes]
rs68065132	0.99[ASN][1000 genomes]
rs7140554	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7152224	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7152382	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7152522	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153037	1.00[ASW][hapmap];0.93[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154244	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729557	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Distal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)