SNP Report
Basic Infomation
| Name | rs2180611 dbSNP |
|---|---|
| Location | chr:14,69120485 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10873215 | 0.90[CHD][hapmap];0.88[JPT][hapmap] |
| rs11158755 | 0.88[JPT][hapmap] |
| rs12436964 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12893578 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs17756585 | 0.86[JPT][hapmap] |
| rs1884811 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2273485 | 0.88[JPT][hapmap] |
| rs4643253 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4899249 | 0.90[CHD][hapmap];0.88[JPT][hapmap] |
| rs4899250 | 0.88[JPT][hapmap] |
| rs4902620 | 0.88[JPT][hapmap] |
| rs4902621 | 0.88[JPT][hapmap] |
| rs7140554 | 0.88[JPT][hapmap] |
| rs7152224 | 0.88[JPT][hapmap] |
| rs7153037 | 0.86[JPT][hapmap] |
| rs7154244 | 0.88[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259038 | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014