SNP Report
Basic Infomation
| Name | rs4851547 dbSNP |
|---|---|
| Location | chr:2,102761767 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12613301 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17026654 | 0.96[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs17767183 | 0.86[ASW][hapmap] |
| rs17818195 | 0.86[ASW][hapmap] |
| rs1978330 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3917225 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3917239 | 0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3917243 | 1.00[JPT][hapmap];0.80[TSI][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4851000 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4851544 | 0.96[CEU][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4851546 | 0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7580384 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014