SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12613301	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17026654	0.92[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17767183	0.86[ASW][hapmap];0.93[LWK][hapmap]
rs17818195	0.86[ASW][hapmap];0.93[LWK][hapmap]
rs1978330	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3917239	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3917243	1.00[JPT][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4851000	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4851544	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs4851546	0.90[EUR][1000 genomes]
rs4851547	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7580384	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1R1	Proximal transcriptional regulation
IL1R1	Distal transcriptional regulation
IL1R1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 4)