Home
Search
List search
Advanced Search
Data content
Tutorial
About Us
Feedback
rVarBase
SNP Report
Basic Infomation
Name
rs4405320  
dbSNP
Location
chr:11,63367058
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2959880
0.83[CEU][hapmap]
rs3934131
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364222
0.98[EUR][1000 genomes]
rs568790
0.83[CEU][hapmap]
rs61929725
0.85[AFR][1000 genomes]
rs7116486
1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7944240
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PLA2G16
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
CHI3L2
SCAN
HRASLS3
Pritchard
SNORA57
SCAN
GNG3
SCAN