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rVarBase
SNP Report
Basic Infomation
Name
rs7116486  
dbSNP
Location
chr:11,63364856
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2959880
0.83[CEU][hapmap]
rs3934131
1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4405320
1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56364222
0.97[EUR][1000 genomes]
rs568790
0.84[CEU][hapmap]
rs7944240
0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PLA2G16
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)