SNP Report
Basic Infomation
| Name | rs61929725 dbSNP |
|---|---|
| Location | chr:11,63381458 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10501394 | 0.81[EUR][1000 genomes] |
| rs11231543 | 0.81[EUR][1000 genomes] |
| rs12274980 | 0.81[EUR][1000 genomes] |
| rs17158453 | 0.81[EUR][1000 genomes] |
| rs17656941 | 0.81[EUR][1000 genomes] |
| rs2959876 | 0.81[EUR][1000 genomes] |
| rs35345497 | 0.81[EUR][1000 genomes] |
| rs4405320 | 0.85[AFR][1000 genomes] |
| rs476691 | 0.81[EUR][1000 genomes] |
| rs482915 | 0.81[EUR][1000 genomes] |
| rs518490 | 0.81[EUR][1000 genomes] |
| rs550629 | 0.81[EUR][1000 genomes] |
| rs551466 | 0.81[EUR][1000 genomes] |
| rs562549 | 0.81[EUR][1000 genomes] |
| rs61928162 | 0.81[EUR][1000 genomes] |
| rs61928163 | 0.81[EUR][1000 genomes] |
| rs61928165 | 0.81[EUR][1000 genomes] |
| rs61928166 | 0.81[EUR][1000 genomes] |
| rs61928167 | 0.81[EUR][1000 genomes] |
| rs61928168 | 0.81[EUR][1000 genomes] |
| rs61928195 | 0.81[EUR][1000 genomes] |
| rs61928196 | 0.81[EUR][1000 genomes] |
| rs61929728 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61929731 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7482863 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7931908 | 0.81[EUR][1000 genomes] |
| rs7944240 | 0.85[AFR][1000 genomes] |
| rs7949447 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203520 | Proximal transcriptional regulation |
| GGCX | Distal transcriptional regulation |
| VAMP8 | Distal transcriptional regulation |
| HIST1H2BD | Distal transcriptional regulation |
| PLA2G16 | Distal transcriptional regulation |
| PLA2G16 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014